Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs73193303 | chr4:3192200 | A/G | 9.39E-5 | 485 | 16.8 | 14.03 | 14.3 | KM Plot |
| THCA | rs73203495 | chr8:11580334 | A/G | 0.000267 | 485 | 15.8 | 15.83 | 17.18 | KM Plot |
| THCA | rs73217283 | chr21:41145611 | T/C | 4.64E-5 | 487 | 15.63 | 17.03 | 50 | KM Plot |
| THCA | rs73220932 | chr3:139253489 | G/T | 4.39E-6 | 490 | 15.93 | 16.05 | 14.53 | KM Plot |
| THCA | rs73220940 | chr3:139266988 | A/G | 3.54E-5 | 487 | 15.87 | 17.07 | 13.08 | KM Plot |
| THCA | rs73220941 | chr3:139268285 | C/T | 4.78E-6 | 487 | 15.9 | 16.87 | 14.53 | KM Plot |
| THCA | rs73220944 | chr3:139270783 | C/T | 5.03E-7 | 479 | 16.07 | 14.77 | 14.8 | KM Plot |
| THCA | rs73223540 | chr3:137293395 | G/A | 0.00024 | 478 | 16.33 | 15.2 | 11.98 | KM Plot |
| THCA | rs73228122 | chr3:111271121 | G/T | 6.53E-5 | 489 | 16.27 | 14.93 | 16.55 | KM Plot |
| THCA | rs73360629 | chr7:64259113 | G/A | 2.96E-11 | 489 | 16.37 | 12.62 | 16.87 | KM Plot |
| THCA | rs7338141 | chr13:49172776 | A/G | 1.8E-5 | 490 | 34.1 | 15.83 | 15.9 | KM Plot |
| THCA | rs73384492 | chr12:98981373 | A/G | 9.93E-5 | 479 | 15.17 | 17.08 | 25.7 | KM Plot |
| THCA | rs73398536 | chr7:89576927 | C/T | 0.000188 | 488 | 16.05 | 14.25 | 31.97 | KM Plot |
| THCA | rs7340476 | chr2:55227346 | G/C | 0.000186 | 483 | 13.23 | 15.3 | 17.88 | KM Plot |
| THCA | rs73474299 | chr6:79454109 | C/A | 4.35E-6 | 487 | 16.07 | 15.93 | 17.15 | KM Plot |